All Metagenomic articles
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OpinionSharing microbial sequence-based data: The way forward
Public sector data associated with health are a highly valuable resource, yet in practice data-sharing poses multiple challenges. Dr Nicola Holden, from AMI’s One Health Scientific Advisory Group, explores the murky morass of big data.
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FeaturesMicrobiome research and a paradigm shift in urban building design
There is increasing evidence that this association between a host and its microbes not only determines health and disease but also influences the behaviour of humans and other animals.
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NewsResearchers develops metagenomic profiling method
Researchers have developed a new k-mer sketching metagenomic profiler, called sylph, that allows scientists to analyze genomic data more quickly and precisely than other profilers.
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NewsWe may be overestimating the association between gut bacteria and disease, study finds
Many bacterial-linked illnesses, such as inflammatory bowel disease or colorectal cancer, are associated with an overgrowth of gut bacteria thought to be bad actors. But when researchers used a machine learning algorithm to predict the density of microbes—called microbial load, from their gut microbiomes, they found that changes in microbial ...
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NewsAI decodes microbes’ message in milk safety testing approach
DNA sequencing combined with artificial intelligence could detect anomalies that signal trouble in dairy production, researchers report.
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NewsGut microbiome influences location and type of immune cells
Researchers have found that different anatomical sections of the gastrointestinal tracts of mice carry different compositions of microbial communities, and the specific makeup of the microbiota can influence the type and abundance of immune cells in any particular region.
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FeaturesWhat a waste: poop and plastic in the study of purple martin microbiomes
Sometimes questions on conservation in research can take multiple forms.
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NewsWastewater could yield thousands of novel viruses, study reveals
Deep metagenomic sequencing of wastewater in Berlin over 17 months shows this technique could help forecast disease outbreaks and monitor the spread of human pathogens. It can also reveal thousands of novel viruses, a new study reveals.
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NewsNew approach to measuring ‘healthy microbiomes’ in nature and the gut
Focusing on four common diseases – diabetes, heart disease, depression and bowel cancer – new research provides insights into the importance of a healthy microbiome balance in the human gut and in the environment.
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NewsLightning, hippos and a spotted hyena: a memorable Functional Metagenomics 2024 meeting
Nearly 70 scientists from 14 countries gathered at Kruger National Park in South Africa to share the latest research in metagenomics, as AMI Healthy Land Scientific Advisory Group member Professor Don Cowan explains.
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News2,000-year-old shipworm mystery solved - its destructive skills are down to bacterial symbionts
Scientists have discovered that a population of symbiotic microbes, living in an overlooked sub-organ of the shipworm gut called the ’typhlosole’, have the ability to secrete the enzymes needed to digest lignin—the toughest part of wood.
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NewsLung microbiomes predict mortality in children following bone marrow transplant
Using a method that identifies all potentially pathogenic organisms present in the lungs, scientists have discovered links between certain microbial communities and the relative risk of mortality in children who undergo bone marrow transplants.
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NewsEngineers develop innovative microbiome analysis software tools
Since the first microbial genome was sequenced in 1995, scientists have reconstructed the genomic makeup of hundreds of thousands of microorganisms and have even devised methods to take a census of bacterial communities on the skin, in the gut, or in soil, water and elsewhere based on bulk samples, leading ...
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NewsMicrobiome studies help explore treatments for genetic disorders
Researchers have discovered a collection of molecular tools to rewrite DNA through an even more efficient and precise genome editing process. They are investigating the clinical development of a group of enzymes for sub-retinal injections.
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NewsMajor genetic meta-analysis reveals how antibiotic resistance in babies varies according to mode of birth, prematurity, and where they live
Meta-analysis of genetic studies from 10 countries finds infants born by C-section have more antibiotic resistance genes; antibiotic use and prematurity also fuel resistance.
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NewsNew study reveals burn injury disrupts gut microbiome and weakens intestinal mucus barrier
The gut microbiota, a complex ecosystem within the human intestinal tract, is increasingly recognized for its vital role in human health and disease. Notably, its relationship with intestinal damage due to burns has been underexplored. New study has unveiled the pivotal role of gut microbiota in the ...
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NewsScientists discover a novel vehicle for antibiotic resistance
An antibiotic-resistance gene forms an unusual structure that may provide constant protection against tetracycline in a common gut bacterium.
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NewsEffects of primer pairs, PCR conditions, and peptide nucleic acid clamps on plant root fungal diversity assessment
A new study evaluates the combined effects of primer pairs, associated annealing temperature (Ta), and PNA clamps in determining the fungal community diversity and composition associated with plant roots.
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NewsMicrobiome changes in body linked to kidney stone formation
A new study has found changes in the microbiome in multiple locations in the body are linked to the formation of kidney stones.
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NewsProspective study clarifies the role of an innovative metagenomic tool in diagnosing infection
A new study aims to improve use of metagenomics using next-generation sequencing (mNGS) to identify a wide range of pathogens, including rare or novel microorganisms.
